Clouds are mentioned in the Quran in these verses:

[2:57] We shaded you with clouds (in Sinai), and sent down to you manna and quails: “Eat from the good things we provided for you.” They did not hurt us (by rebelling); they only hurt their own souls.

[2:164] In the creation of the heavens and the earth, the alternation of night and day, the ships that roam the ocean for the benefit of the people, the water that God sends down from the sky to revive dead land and to spread in it all kinds of creatures, the manipulation of the winds, and the clouds that are placed between the sky and the earth, there are sufficient proofs for people who understand.

[2:210] Are they waiting until God Himself comes to them in dense clouds, together with the angels? When this happens, the whole matter will be terminated, and to God everything will be returned.

[7:57] He is the One who sends the wind with good omen, as a mercy from His hands. Once they gather heavy clouds, we drive them to dead lands, and send down water therefrom, to produce with it all kinds of fruits. We thus resurrect the dead, that you may take heed.

[7:160] We divided them into twelve tribal communities, and we inspired Moses when his people asked him for water: “Strike the rock with your staff,” whereupon twelve springs gushed out therefrom. Thus, each community knew its water. And we shaded them with clouds, and sent down to them manna and quails: “Eat from the good things we provided for you.” It is not us that they wronged; it is they who wronged their own souls.

[13:12] He is the One who shows you the lightning as a source of fear, as well as hope, and He initiates the loaded clouds.

[24:43] Do you not realize that God drives the clouds, then gathers them together, then piles them on each other, then you see the rain coming out of them? He sends down from the sky loads of snow to cover whomever He wills, while diverting it from whomever He wills. The brightness of the snow almost blinds the eyes.

[25:25] The heaven will break apart, into masses of clouds, and the angels will descend in multitudes.

[27:88] When you look at the mountains, you think that they are standing still. But they are moving, like the clouds. Such is the manufacture of God, who perfected everything. He is fully Cognizant of everything you do.

[30:48] God is the One who sends the winds, to stir up clouds, to be spread throughout the sky in accordance with His will. He then piles the clouds up, then you see the rain coming down therefrom. When it falls on whomever He chooses from among His servants, they rejoice.

[35:9] God is the One who sends the winds to stir up clouds, then we drive them towards barren lands, and revive such lands after they were dead. Thus is the resurrection.

[52:44] When they see masses falling from the sky, they will say, “Piled clouds!”

[56:69] Did you send it down from the clouds, or did we?

[77:1] (Angels) dispatched in succession.

[77:2] To drive the wind.

[77:3] Stir up clouds.

[77:4] Distribute the provisions.

[77:5] Deliver messages.

[78:14] We send down from the clouds pouring water.

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